This toddler muffins recipe makes fluffy, perfectly moist muffins. They’re full of carrots and zucchini, and sweetened with flavors of cinnamon, maple syrup and vanilla. These mini muffins are sure to become a favorite of both kids and adults!
Looking for a toddler muffin recipe packed with wholesome ingredients? Check out this recipe for a gluten-free muffin all ages will love.

These mini muffins are a treat for toddlers, but they are an ideal choice for adults as well. Homemade muffins are great as a quick breakfast choice on busy mornings. In the afternoon, they make a convenient and nutritious snack for those on a gluten-free diet.
Kids love toddler muffins because their size makes them perfect for little hands to hold. Their light sweetness will make children forget they’re eating vegetables.
Meanwhile, adults won’t be able to stop reaching for veggie muffins.
While carrots and zucchini have a natural sweetness, there’s also an extra shot of flavor from cinnamon, maple syrup and vanilla extract. Who can resist?
Needless to say, you’ll definitely want to make a double batch!
You also might like this gluten-free zucchini bread or these gluten-free zucchini muffins! These gluten-free muffins, gluten-free donuts and gluten-free pancakes are more family favorites!
You also might like these oat flour muffins!
Ingredients in Mini Carrot Zucchini Muffins
A quick glance at the ingredient list will give you an idea of how delicious these healthy muffins are.
Aside from gluten-free flour and nutritious vegetables, there is also a fantastic balance of flavor! The end result is a delicious recipe that’s always an allergy-friendly hit.
- Ground cinnamon: Cinnamon adds a layer of delicious, comforting spice that’s reminiscent of your favorite carrot cake of zucchini bread.
- Coconut oil: Coconut oil adds healthy fats and brings moisture to these muffins.
- Maple syrup: No need for refined sugar in these muffins—maple syrup brings the perfect sweetness and depth of flavor.
- Egg: Egg acts as a binder and adds protein to these muffins.
- Vanilla extract: Every muffin recipe is made better with a bit of vanilla extract!
- Carrots: Even if your toddler doesn’t like to eat raw or cooked carrots, they’ll love these muffins—and won’t even know they’re there! Carrots add potassium, antioxidants, and beta-carotene to a toddler diet.
- Zucchini: Zucchini adds moisture and nutrients like vitamin A, manganese, and vitamin C.
- Almond flour: Almond flour is a gluten-free flour alternative that makes for delicious toddler muffins!
- Gluten-free 1:1 baking flour: Choose a high-quality 1:1 baking flour for this recipe, or use brown rice flour instead.
- Salt: Salt enhances the flavor of the muffins and actually makes them taste sweeter!
- Baking powder and baking soda: Both baking powder and baking soda help these muffins to rise and have a light, tender crumb.
How to Make Toddler Muffins

- Mix together the almond flour, brown rice flour, salt, baking powder, baking soda, and cinnamon in a large bowl.
- Combine together (in a separate bowl) the coconut oil, maple syrup, egg, and vanilla extract, stirring until completely mixed.
- Add the dry ingredients to the wet ingredients and mix until well combined. Then stir in the shredded vegetables.
- Fill the muffins cups 3/4 of the way full and bake for 15 minutes, or until lightly golden.

Storage Instructions
If you store them in an airtight container, the mini muffins will stay fresh up to two days at room temperature. Or, store them in the refrigerator for up to a week. If you want the muffins to last longer than a week, I recommend freezing them.
You also might like these chocolate zucchini muffins.

How Do You Freeze Muffins?
This is a great recipe to make ahead in large batches and freeze. This way, you can thaw a lot of muffins at one time, and have them ready for breakfast or as a handy snack.
To freeze the muffins:
- Prepare the batter and bake the muffins as instructed.
- Transfer the muffins to a rack and allow them to cool completely.
- Place the muffins in a single layer on a baking sheet and place the baking sheet into the freezer.
- Freeze for one to two hours, or until the muffins are solidly frozen.
- Transfer the muffins into a freezer bag. When closing the bag, be sure to remove as much air as possible. Store in the freezer for up to two months.
FAQs
Most babies can start eating muffins around 6 months old. At this stage, they should be able to pick up small pieces of the muffin and feed themselves. These muffins are packed with healthy ingredients like carrots and zucchini, making them a nutritious snack!
There are many quick, easy, and healthy things you can bake for a toddler—including these carrot zucchini toddler muffins, which are sweetened with natural sugars! My kids also love banana bread, zucchini bread, oatmeal breakfast cookies, baked oatmeal, and homemade granola bars.
Yes! Bran muffins are packed with fiber and can be a great snack option for toddlers—especially for picky eaters who may not be getting fiber from vegetables.
English muffins are usually a safe snack for a one-year-old. Depending on how many teeth they have, they can either suck on the muffin or use their pincer grasp to pick up small pieces of the muffin off of a tray.
These carrot zucchini muffins make a great breakfast for a 12-month-old. Some other healthy options include whole grain pancakes or waffles, oatmeal, eggs, or yogurt with berries.
Though toddlers should be eating a wide variety of nutritious foods, there are still certain foods they should avoid. Whole grapes, hot dogs, large pieces of meat, and cough drops can present choking hazard and should be avoided (or cut into small pieces). Hard foods like nuts, popcorn, chips, and seeds can also present a choking hazard.
By two years old, a toddler should be eating at least three nutritious meals per day, as well as a couple snacks. These foods can be the same as the adults—with modifications like cutting into bite-size pieces or limiting spices. Toddler muffins are a great way to pack in some nutrients and take on-the-go!
Expert Tips & Tricks
- I like to use mini muffin pans to make these muffins. It makes the perfect healthy muffin bites for babies and toddlers, and clean-up is a breeze! Alternatively, you could make larger muffins for adults.
- If you only have zucchini or only have carrots, you can just double the amount of one vegetable. You could also try making these healthy toddler muffins with yellow squash.
- Add chocolate chips to these muffins for an extra delicious treat!
- No need to use muffin liners, if you don’t have them. Just spray the muffin pan and they’ll come out of the pan easily.

Other Muffin Recipes to Try
With the recipe for the best toddler muffins under your belt, you may want to bake more muffins for a healthy snack!
For an easy, perfect breakfast choice, I definitely recommend my easy Coconut Flour Banana Muffins or my Buckwheat Muffins. And if you’re craving something a bit more sweet and decadent, how about a Chocolate Almond Butter Muffin?
More Muffin Recipes
I hope you love these family favorite muffins as much as we do! If you try these muffins, be sure to leave me a comment/rating below. I’d love to hear from you!

Toddler Muffins (with Carrots and Zucchini!)
Ingredients
- 1 cup almond flour
- 1/4 cup gluten-free 1:1 baking flour or brown rice flour
- 1/4 teaspoon salt
- 1 teaspoon baking powder
- 1/2 teaspoon baking soda
- 2 teaspoons ground cinnamon
- 1/3 cup coconut oil
- 1/3 cup maple syrup
- 1 large egg
- 1 teaspoon vanilla extract
- 1/2 cup grated carrots from 1 medium peeled carrot
- 1/2 cup grated zucchini from 1 medium unpeeled zucchini
Instructions
- Preheat the oven to 350. Line a mini muffin pan with liners or oil lightly with coconut oil. I like to use a mini silicone muffin pan.
- In a large bowl, mix together the almond flour, brown rice flour, salt, baking powder, baking soda, and cinnamon.
- In the bowl of a food processor, combine the coconut oil, maple syrup, egg, and vanilla extract. Pulse until thoroughly combined. Add the dry ingredients and pulse until well incorporated. Stir in the shredded vegetables with a wooden spoon.
- Fill the muffins cups 3/4 of the way full. Bake for 15 minutes, or until lightly golden. Cool for 5 minutes in the pan. Enjoy!
Notes
Nutrition
Recipe originally published in August 2013. Updated in June 2022.

Hello, I cant find zucchini because ut is out of season. Any there anything else I could use?
These look fab although I don’t have almond flour. Would they work with all buckwheat flour instead?
I subbed out rice flour for wheat flour and made 12 in a regular muffin pan (I added about 10 min additional baking time). Came out great!
Very good. Not too sweet. I subbed corn flour instead of the rice and avocado oil instead of the coconut. They turned out light fluffy and moist. I filled the muffin tins full so they would have nice muffin tops and they turned out beautiful. Thank you for this great recipe!!
Can I use a regular muffin tin? I do not have a mini muffin pan available….
Yes! You might need to increase the baking time by 5 minutes but that should work fine.
I used a regular muffin tin but it only made 9 muffins. I still baked them for 15 minutes and they turned out great!
These are So yummy! I used Almond Flour instead of Brown Rice Flour and added an extra egg…but they were still a bit soggy and messy. Any other suggestions?
Almond flour is much more moist than brown rice flour so it would greatly change the consistency of these muffins! I would try it with the brown rice flour.
Love the ingredients for this recipe…but my muffins are so crumbly, driving me bonkers when my 16 month old eats them because they make such a mess.
Any tips on how to correct or what happened here? 🙁
Looks great.
Can you give me the calorie count of these?
I just tried zucchini and carrot toddler muffins.. they are so awesome!! Loved this recipe!! It’s a keeper!!
So glad you liked the muffins!
This looks amazing! My son can’t eat almonds, is there another flour I could use that would work? Thank you!!
Great recipe, thank you!! My 16-month old devours these, even while he’s teething and sick and won’t eat anything else. If that’s not enough, I sneak one for myself every chance I get, and eat all his crumbs off his tray because they are just too good to waste!!! Don’t judge 🙂 Just wanted to let everyone who is perusing the hundreds of “toddler muffin” recipes on Pinterest, to know this is a tried & true keeper
I’m so happy the hear this! My 1-year-old loves these too! And I totally sneak a few whenever I make them too – so good!
These turned out delicious. And my 14 month old LOVES them. I did use all purpose flour instead of almond flour, though. Will make them again for sure.
Did you use brown rice flour with the all purpose flour?
My daughters school is nut free. What can I use besides almond flour
Delicious!!! I’m going to have to hide the rest or they’ll be gone before sun down!
I”m glad they turned out for you! 🙂